This website contains supplements to the word document-based supplementary material. It includes the markdown documents of the code I used to do the analyses, and the full figures and code can be accessed on the github repository itself.
Please note that the GO annotation methods are not in Rmarkdown. The code used can be found here.
The markdowns are named according to the Supplementary Material section to which they belong (e.g. Differential Expression Analysis is in Supplement 3)
Preprint: https://www.biorxiv.org/content/10.1101/2022.10.05.510848
Publication: Bolton, P.E., Ryder, T.B., Dakin, R., Houtz, J.L., Moore, I.T., Balakrishnan, C.N.†, Horton, B.M.† (2024) Neurogenomic landscape associated with status-dependent cooperative behavior † contributed equally
Data Archive: Bolton, Peri; Dakin, Roslyn; Ryder, T. Brandt; Houtz, Jennifer L.; Moore, Ignacio T.; Balakrishnan, Christopher N; et al. (2023). Count Data, Phenotype Data, R Code and Results Visualizations HTML. National Museum of Natural History. Online resource. https://doi.org/10.25573/data.22186516